PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5683_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 929aa    MW: 101393 Da    PI: 6.8088
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5683_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.4e-06493513526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C+++++ G C+ G++CkF+H+
  Neem_5683_f_2 493 YCHHYLK-GRCQEGEKCKFSHD 513
                    5******.*************7 PP

2zf-CCCH20.49.1e-07547567525
                    --SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                    +C++f + G+C++Gd C F+H
  Neem_5683_f_2 547 PCSNFVAKGFCNRGDDCLFSH 567
                    7******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.272488515IPR000571Zinc finger, CCCH-type
SMARTSM003560.0034489514IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5489513IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723517544IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-4517543IPR000571Zinc finger, CCCH-type
SMARTSM003560.02545569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-5546570IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.131547570IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MEKSQIETTS FCISAHRHLK SETYRTLIQI LSHCYEHSQI SAPPQEPPPE ISEHGELVGP  60
ASTAPKNSKA EKDAALDESL GAVCIEDRGL GDARMAIDEI EDIMQVEENE DLSKQNPMVG  120
ISAEGTGSRD EGFDRQQRLM DELEHIMKGD EVLVQENDIS FSNMCVGNDQ SGVVALVNGR  180
EEHADVQQVV NEESRSEAWL QVDRGDCNLD ISNSFDSSAS RNIDSQVSKL YEDGEDRNSS  240
LRTNALEVEN DMQQKEMEEE KLVLTDGRTG ASNYGAEDVE VEEGEISDSF DVDGISIDMI  300
SDHAVVSNET KVSEDVIDKR DLFSNGQNRG TEIFSESYSF NLNVVDQVNS GRVVELKEMV  360
RDEKQCKSNI TADGTAMMAI DADRYNFMPQ AGRNKRKASR DEVNIGSFSV CAENSKVHGE  420
IVEQSATQKQ GITYKEKQQD SGVCNKKKRS APSKERKAKK KQKERKRRAE KNRQLGVKRL  480
KLRPIVKPKT VTYCHHYLKG RCQEGEKCKF SHDTVPLTKS TPCCHFARKS CMKGDDCPFD  540
HDLSKYPCSN FVAKGFCNRG DDCLFSHKIP PKKDGSSSSS ACLPQLKSPL LLHTLNSLKQ  600
PNVDQVSRQN AGVLSNNGDV SSSKNVQQNV AKPVLKPPAL APKGINCLFV GKSLVVESSK  660
LKQGSSSPKR NKSGKVANQT EQNASGTVQN MDETPKQILA APKGVNFLSI GNSSLENSSG  720
KKLASLFLSR ENGAKFSQSS TSSVHGAESN AKVGNLATHS VSSSVEKSND MLKKTQSIVT  780
PQRLNFLSNG NALTNNSLSD KQDSLPASSG SGSNVSLQVN QHTTDAHQNS SAILWRLPAS  840
PLASGHSSDR LAHGYYKSTP NSAQKALMST LAFAAKIESE MKISLSAVNN GFNSSTRDSG  900
NDGGRSTELA LQIGIENSCR LKTGGYKVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446467KKRSAPSKERKAKKKQKERKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451497.10.0hypothetical protein CICLE_v10007413mg
TrEMBLV4UFB30.0V4UFB3_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1724178